SNP Profiles of LV20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
1._RUQ_354	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
2._LV_20_[POU]	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
3._RUQ_354	_	_	CG	_	_	_	_	GT	_	CT	_	AG	_	AG
4._RUQ_354	_	AG	CG	CT	_	_	_	GT	_	_	_	_	CC	AG
5._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
6._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
7._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
8._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
9._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
10._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
11._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
12._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
13._RUQ_354	AA	AG	CG	AG	AG	AC	AG	AC	_	_	AT	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
1._RUQ_354	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
2._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
3._RUQ_354	_	_	_	_	_	GG	GT	GG	_	CC	CG	_	_	CC
4._RUQ_354	_	_	_	_	TT	GG	GT	_	TT	CC	CG	GT	TT	CC
5._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
6._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
7._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
8._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
9._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
10._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
11._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
12._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
13._RUQ_354	AA	AT	GG	AG	AG	CC	AC	_	AA	CC	CG	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
1._RUQ_354	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
2._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
3._RUQ_354	_	_	_	_	AA	_	_	_	_	CC	_	_	X_X	X_X
4._RUQ_354	AG	_	AA	CC	AA	CC	AC	CT	GT	CC	_	_	X_X	X_X
5._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
6._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
7._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
8._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
9._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
10._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
11._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
12._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
13._RUQ_354	_	GG	AA	GG	AA	GG	AC	AG	AC	CC	TT	CG	X_X	X_X

Input profile: LV_20_[POU]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

1._LV_20_[POU] RUQ_354

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LV_20_[POU]

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

3._LV_20_[POU] RUQ_354

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

7._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

8._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

13._LV_20_[POU] RUQ_354

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25